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Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis

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This issue lists Renovate updates and detected dependencies. Read the [Dependency Dashboard](https://docs.renovatebot.com/key-concepts/dashboard/) docs to learn more.[View this repository on the Mend.io Web Portal](https://developer.mend.io/github/ursgal/ursgal). ## Config Migration Needed - [ ]...

This PR contains the following updates: | Package | Change | Age | Confidence | |---|---|---|---| | [dash-html-components](https://redirect.github.com/plotly/dash-html-components) | `==1.1.1` -> `==2.0.0` | [![age](https://developer.mend.io/api/mc/badges/age/pypi/dash-html-components/2.0.0?slim=true)](https://docs.renovatebot.com/merge-confidence/) | [![confidence](https://developer.mend.io/api/mc/badges/confidence/pypi/dash-html-components/1.1.1/2.0.0?slim=true)](https://docs.renovatebot.com/merge-confidence/) | ### GitHub Vulnerability...

This PR contains the following updates: | Package | Change | Age | Confidence | |---|---|---|---| | dash-core-components | `==1.16.0` -> `==2.0.0` | [![age](https://developer.mend.io/api/mc/badges/age/pypi/dash-core-components/2.0.0?slim=true)](https://docs.renovatebot.com/merge-confidence/) | [![confidence](https://developer.mend.io/api/mc/badges/confidence/pypi/dash-core-components/1.16.0/2.0.0?slim=true)](https://docs.renovatebot.com/merge-confidence/) | ### GitHub Vulnerability...

This PR contains the following updates: | Package | Change | Age | Confidence | |---|---|---|---| | [dash](https://plotly.com/dash) ([source](https://redirect.github.com/plotly/dash)) | `==1.20.0` -> `==2.15.0` | [![age](https://developer.mend.io/api/mc/badges/age/pypi/dash/2.15.0?slim=true)](https://docs.renovatebot.com/merge-confidence/) | [![confidence](https://developer.mend.io/api/mc/badges/confidence/pypi/dash/1.20.0/2.15.0?slim=true)](https://docs.renovatebot.com/merge-confidence/) | ### GitHub...

This PR contains the following updates: | Package | Type | Update | Change | |---|---|---|---| | [actions/setup-python](https://redirect.github.com/actions/setup-python) | action | major | `v2` -> `v5` | | [actions/setup-python](https://redirect.github.com/actions/setup-python) |...

This PR contains the following updates: | Package | Type | Update | Change | |---|---|---|---| | [actions/checkout](https://redirect.github.com/actions/checkout) | action | major | `v2` -> `v4` | --- ### Release...

After merge of #150 , the core digest function has "count_missed_cleavages" and "no_missed_cleavages". This should be changed, since "no_missed_cleavages" is redundant and should be covered by count_missed_cleavages = 0. Need...

enhancement

This PR contains the following updates: | Package | Change | Age | Confidence | |---|---|---|---| | [plotly](https://redirect.github.com/plotly/plotly.py) ([changelog](https://redirect.github.com/plotly/plotly.py/blob/main/CHANGELOG.md)) | `==4.14.3` -> `==6.5.0` | [![age](https://developer.mend.io/api/mc/badges/age/pypi/plotly/6.5.0?slim=true)](https://docs.renovatebot.com/merge-confidence/) | [![confidence](https://developer.mend.io/api/mc/badges/confidence/pypi/plotly/4.14.3/6.5.0?slim=true)](https://docs.renovatebot.com/merge-confidence/) | --- ###...

I ecountered an error when runing python setup.py intsall. Could you please help me figure out what's wrong? `Executable for msgfplus_v2019_01_22 is not available on your system [ - HTTP...

This PR contains the following updates: | Package | Type | Update | Change | |---|---|---|---| | [actions/checkout](https://redirect.github.com/actions/checkout) | action | major | `v2` -> `v6` | --- ### Release...