Yingli Zhou

Dear developer， I have two questions with `bwa mem` I want to know the minimum identity rate in `bwa mem`. If a pair-end read has 98% identity rate with contig1...

nextgraph segmentation fault

13

Hi developer, **Describe the bug** I meet an error with `03.ctg_graph/01.ctg_graph.sh.work/ctg_graph0/nextDenovo.sh` I attached the log files [nextDenovo.sh.e.txt](https://github.com/Nextomics/NextDenovo/files/6300714/nextDenovo.sh.e.txt) [pid161556.log.info.txt](https://github.com/Nextomics/NextDenovo/files/6300717/pid161556.log.info.txt) Look forward to your reply. Thanks. Genome characteristics genome size：2.1G Input data...

No distillate information found warning

3

Hi, There are too many warnings like the following when I run `DRAM-v.py distill -i annotation/annotations.tsv -o annotation/distilled.` ``` /DRAM/lib/python3.9/site-packages/mag_annotator/summarize_vgfs.py:101: UserWarning: No distillate information found for gene TS03-LD14_NODE_934__full-cat_1_15 warnings.warn("No distillate...

Error executing

2

Hi, I run orthomcl-pipeline with the following error. Could you help me solve it? Thanks > =Stage 9: Parse Blast Results= cat /home/software/orthomcl-pipeline/testout/blast_results/blast_results.* > /home/software/orthomcl-pipeline/testout/blast_load/all.fasta /home/software/orthomclSoftware-v2.0.9/bin/orthomclBlastParser "/home/software/orthomcl-pipeline/testout/blast_load/all.fasta" "/home/software/orthomcl-pipeline/testout/compliant_fasta" 1>/home/software/orthomcl-pipeline/testout/blast_load/similarSequences.txt 2>/home/software/orthomcl-pipeline/testout/log/9.parseBlast.log...

Hi, I am using VirHostMatcher to predict the interaction between host and virus. But I don’t know the threshold to pick the positive interaction result from d2star_k6.csv. Could you give...