David Twesigomwe

icon company Sydney Brenner Institute for Molecular Bioscience icon location Wits University, Johannesburg icon location Bioinformatics scientist in the making

Results 4 issues of David Twesigomwe

Realignment stats

1 comment

Hi Hannes, Would it be possible to include a feature for obtaining some mapping statistics after read realignment to the pangenome? Use case: Comparing the coverage between two regions after...

enhancement

Including advanced options for graphtyper genotype_sv

4 comment

@hannespetur I was of a view that some advanced options would be great for `graphtyper genotype_sv` ...is there a way to include functionality for this?

enhancement

How to add queries in UpsetR plot initially produced with expression input

I am using an expression input to make an UpsetR plot for variant call-sets: Input: A=120, B=120, C=80, A&B=48, A&C=20, B&C=11, A&B&C=24 I have the counts of the number of...

SNV discovery from PacBio or Nanopore data

4 comment

Hi @hannespetur, Sorry I might have missed this somewhere. Does Graphtyper perform SNV discovery from PacBio or Nanopore data or is this something still under development? Thank you Kind regards,...