Including advanced options for graphtyper genotype_sv

[twesigomwedavid]

@hannespetur I was of a view that some advanced options would be great for graphtyper genotype_sv ...is there a way to include functionality for this?

[hannespetur]

Hello,

which advanced options would you like to view for graphtyper genotype_sv?

Best, Hannes

[twesigomwedavid]

Hi,

I think the general advanced options such as --sam_flag_filter, --primer_bedpe, --no_filter_on_proper_pairs can do because they are not specific to calling SNVs only.

Thanks,

David

[hannespetur]

Yeah, that makes sense. I will try to work on adding those soon.

Best, Hannes

[twesigomwedavid]

Alright, cool

Cheers, David