Realignment stats

[twesigomwedavid]

Hi Hannes,

Would it be possible to include a feature for obtaining some mapping statistics after read realignment to the pangenome?

Use case: Comparing the coverage between two regions after the reads have been mapped to the graph structure instead of relying on coverage stats from the original linear reference alignment.

Regards, David

[hannespetur]

Hey,

I am not sure when I will have time to work on this feature but its good to know that it would be useful.

Best, Hannes