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Hi-C mode about the allotetraploid

2

Hi, developers I have a question that I would like to ask you. I am assembling an allotetraploid genome (AABB), using the Hi-C mode and obtaining two haplotypes (hap1 and...

Regarding the Use of Incomplete Plant Mitochondrial Genome Assembly Outputs for Subsequent Analysis

2

Thank you very much for making this software. I have a question: When I assembled the plant mitochondrial genome, I got a file named embplant_mt.K105.scaffolds.graph1.1.path_sequence.fasta. Can I use the generated...

how to resolve the Eorro about the Makefile:181.

提问

1

老师您好： 在运行ALLHiC的Partition过程中出现如下报错： Extract function: calculate an empirical distribution of Hi-C link size based on intra-contig links CMD: allhic extract prunning.bam /data/yybu/mengguliu/20230507_Data/genome_assembly/mgl_hap2.fasta --RE GATC Can't exec "allhic": No such file or...