提问

Open twdawd opened this issue 2 years ago • 1 comments

老师您好：在运行ALLHiC的Partition过程中出现如下报错： Extract function: calculate an empirical distribution of Hi-C link size based on intra-contig links CMD: allhic extract prunning.bam /data/yybu/mengguliu/20230507_Data/genome_assembly/mgl_hap2.fasta --RE GATC Can't exec "allhic": No such file or directory at ./ALLHiC_partition line 38. Partition contigs based on prunning bam file CMD: allhic partition prunning.counts_GATC.txt prunning.pairs.txt 19 --minREs 25 Can't exec "allhic": No such file or directory at ./ALLHiC_partition line 48. 想问下老师该如何解决非常感谢！

Aug 01 '23 12:08 twdawd

I think this due to the environment.

export PATH=/your/path/to/ALLHiC/scripts/:/your/path/to/ALLHiC/bin/:$PATH

This may be helpful.

Sep 13 '23 06:09 kedduck