Torsten Seemann
Torsten Seemann
I agree with @jianshu93 - best practice for command line tools in our field are to use sub commands. A single binary Swiss Army Knife. Unclear why it would a...
@ckhiggs this is a good idea, but i suspect it's not trivial to do. perhaps each "rule" that is run could add it's own depenencies to a log, and then...
@kristyhoran this looks like a bug related to Kraken2 database or ENV var not being set?
Also document `LOWCOV`, `HET` etc! via @kristyhoran
The target error for the .hpp possibly means it is an implicit rule (or pattern rule) instead ofg an explicit one,m but given .hpp is a C++ header file, it...
@sjackman I am thinking off adding a special database of well known small proteins. In Staph for example there is a 6aa "toxin" gene (!) which never gets found. By...
@sjackman I just went and looked at swissprot bacteria at non-fragment confirmed proteins, and there are about 4500 of them under 200aa long, of which about 1000 are under 100bp....
`replace all non-separator commas with ! (or replace with any character not in the input file)` Impossible in the general case unfortunately!
@kristyhoran has this been implemented? I reckon we should have a dedicated `Reference` tab? Especially if the user provides a GENBANK ref, we could extract all the eheader information from...
@kristyhoran is this still relevant for current version?