barrnap
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tseemann
:microscope: :leo: Bacterial ribosomal RNA predictor
Hello I try to run barrnap to identify rRNA from a eukaryotic genome , the commad as follow: barrnap --kingdom euk --threads 20 --outseq rRNA.fasta < chr1.fasta After running, we...
Hi, I am in a process of trying to build up an eukaryotic full rrna operon database in order to be able to use it with long amplicon ONT generated...
Hi, I have used barrnap to predict rRNA genes. But there are two 16S rRNA genes (1210bp and 977bp). I am not sure if I should choose the longer 16S...
Hi, I am using barrnap for 16s rRNA extraction and it show me this result without creating any output. Tseemann sir i am big fan of you. First of all...
Hi, I've been digging into why --outseq has been generating empty sequence files despite there being results in the Barrnap generated GFF files. It looks like Bedtools is rejecting some...
Dear Torsten, not sure if this has anything to do with you directly, but I just noticed that the barrnap-v0.9 version packaged for Debian/Ubuntu (installed via `apt`) is shipped with...
Barrnap creates an index file of the query sequence before searching for rRNAs. if this inex already exists, it skips the creation of this index. This can lead to problems,...
Hi Torsten. We met a few times during my time at La Trobe a few years back. I'm now at [Plant and Food Research](https://www.plantandfood.co.nz/). We are interested in an open-source...
I’m running barrnap on a fasta of bins with default settings. The resulting GFF contains some instances where sequential sequences (or sequences with a few bases overlapping) are being called...
[barrnap] Running: bedtools getfasta -s -name+ -fo 'rrna.fasta' -fi '/tmp/9tmz9ZJXup' -bed '/tmp/RCzdJ9pUop' *****ERROR: Unrecognized parameter: -name+ *****
