barrnap

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`cmscan -g` is slow but will improve results due to glocal alignment and higher sensitivity

tseemann

If file.fasta is a path to someone elses folder it tries to write the .fai file there and fails, when using --outseq

tseemann

archaea and bacteria 16S duplicate

1

Hi, developer, Thanks for creating such efficient software. I have used it to find the 16S rRNA hits in my de-novo assembled genome bins. My purpose is to search for...

chloelulu

extraneous "+" in string.

JamesRH

Hi Torsten, Great job on a wonderful tool. ;-) Have just noticed that it seems to miss some of the TB 5S rRNA sequence: ``` [barrnap] Found: 5S_rRNA AL123456; L=76/119...

ppgardne

Metagenome mode with ALL kingdoms

3

I use your tool "Prokka" (version 1.10) with your the default rRNA predictor "Barrnap" mainly for metagenome-annotation (and am very happy with it). As my metagenomes consist of bacterial as...

tseemann

Support plant mitochondrion

5

Plant mitochondrion have three rRNA genes: - 5S `rrn5` - 18S `rrn18` - 26S `rrn26`

sjackman

Check versions of bedtools is >= 2.27

1

Needed for `-name+` option.

tseemann

added -gene switch

2

Hi Torsten I added a -gene switch to enable searches specifically for lsu or ssu genes. The solution was simply implemented by creating directories for the respective gene sets in...

HRGV

Annotate rRNA genes containing gaps of Ns

2

RNAmmer is able to annotate rRNA genes containing gaps of Ns. Is this a feature that you would want to implement in Barrnap? See below for an example: ``` fasta...

sjackman