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tseemann
:microscope: :leo: Bacterial ribosomal RNA predictor
I'm getting the following error: ``` [barrnap] This is barrnap 0.9 [barrnap] Written by Torsten Seemann [barrnap] Obtained from https://github.com/tseemann/barrnap [barrnap] Detected operating system: linux [barrnap] Adding /ebio/abt3_projects/Georg_animal_feces/bin/llg/.snakemake/conda/6db1e2f9/lib/barrnap/bin/../binaries/linux to end...
Barrnap v.0.9 produces gff-output and (optionally) a fasta output. The fasta output has the coordinates of each rRNA prediciton in the header, but not the evalue of that prediction. The...
Hi Torsten, Small thing - from the doco ``` Usage: barrnap [options] chr.fa ``` But ``` barrnap-0.9) $ barrnap a.fna [barrnap] This is barrnap 0.9 [barrnap] Written by Torsten Seemann...
@satta has been trying to package Barrnap into Debian-Med but has reported that the SILVA alignments (23S) have a licence with is incompatible with Debian. (It's only free for academic/non-commerical:...
Dear administrator, Could the barrnap be used to predict the rrna of *.fna.gz file? I applied it on a *.fna.gz file, and the system reported the error:  Thanks! Regards,...
Dear Torsten Seemann, I am an enthusiastic user of the barrnap tool. I work with both plant parasitic prokaryotes and eukaryotes. I noticed that when annotating eukaryotic rDNA sequences, the...
I was always wondering (also for rnammer and similar tools) why there always seems to be a strict rule to only search for archaeal OR bacterial rRNAs, but never for...
Hello, I would like to install barrnap in a singularity container but I have the following issue : ./barrnap --quiet examples/small.fna [barrnap] ERROR: Can not find required 'nhmmer' in PATH...
The other columns are pretty straightforward (assuming column 6 is e-value...)
