Taylor Salo

## Summary GCLDAModel currently accepts a count DataFrame and a coordinate DataFrame. If we convert it into an Annotator, it can take a Dataset directly and return a new one....

## Summary We have functions for extracting Cognitive Atlas terms from text. It would be nice to have an Annotator that does this. Related to #248 and #488.

## Summary We currently have `nimare.annotate.text.generate_counts` for extracting terms and associated counts/tf-idf values from text. It would be good to have an Annotator that does the same thing, but which...

## Summary Per today's check-in call with @angielaird, users could benefit from more summary information. What outputs do we want? 1. Cluster table, possibly with AAL regions. We can use...

Add ACE's space-guessing function to `nimare.annotate`

1

## Summary If we add the space guessing function from ACE (see [here](https://github.com/neurosynth/ACE/blob/4e1d8fa8f924547a41c6d8b79cbd9ef9ffef14c2/ace/extract.py)), we could use it on other datasets, like NeuroQuery. ## Additional details Mostly, I think we would...

Remove absolute paths from Dataset.images

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Stems from #320. The new `Dataset.basepath` attribute should be sufficient, so the `Dataset.images` DataFrame should only include relative paths.

[This preprint](https://www.biorxiv.org/content/10.1101/299024v1) describes the word2brain application of the Global Vectors for Word Representation (GloVe) for annotation and encoding based on Neurosynth data. It would be good to implement this in...

Example intermittently breaking docs build

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Here's the traceback from [here](https://app.circleci.com/pipelines/github/neurostuff/NiMARE/956/workflows/065f575e-1037-49e8-9e09-2af981477db5/jobs/4181): ``` Extension error: Here is a summary of the problems encountered when running the examples Unexpected failing examples: /tmp/src/NiMARE/examples/02_meta-analyses/plot_simulated_data.py failed leaving traceback: Traceback (most recent...

NeuroQuery wrapper or algorithm

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Add a wrapper or even the algorithm for [NeuroQuery](https://github.com/neuroquery/neuroquery). ### References Dockès, Jérôme, et al. "Text to brain: predicting the spatial distribution of neuroimaging observations from text reports." International Conference...

GCLDA currently supports symmetry in terms of subregion centroids, but the actual shape and direction of each subregion is estimated independently. It would be nice to add an option that...