rnaseq topic
derfinder
Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches
ExpressionMatrix2
Software for exploration of gene expression data from single-cell RNA sequencing.
rnatoy
A proof of concept RNA-Seq pipeline with Nextflow
pisces
PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
alpine
Modeling and correcting fragment sequence bias for RNA-seq
fishpond
Differential expression and allelic analysis, nonparametric statistics
pm4ngs
Project Manager for NGS data analysis
Scribe-py
Regulatory networks with Direct Information in python