rnaseq topic

List rnaseq repositories
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derfinder

42
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15
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Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches

ExpressionMatrix2

29
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4
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Software for exploration of gene expression data from single-cell RNA sequencing.

rnaseq-nf

64
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98
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A proof of concept of RNAseq pipeline

rnatoy

33
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44
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A proof of concept RNA-Seq pipeline with Nextflow

pisces

28
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3
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PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

alpine

24
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5
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Modeling and correcting fragment sequence bias for RNA-seq

fishpond

24
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9
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Differential expression and allelic analysis, nonparametric statistics

pm4ngs

25
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10
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Project Manager for NGS data analysis

Scribe-py

38
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7
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Regulatory networks with Direct Information in python