protein-structure-prediction topic
prospr
Prospr is a universal toolbox for protein structure prediction within the HP-model. The Python package is based on a C++ core, which gives Prospr its high performance. The C++ core is made available a...
lightdock-rust
A Rust implementation of the LightDock macromolecular docking software
pymissense
PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
PolyFold
An interactive visual simulator for distance-based protein folding
NetSurfP-3.0
NetSurfP 3.0: Protein secondary structure and relative solvent accessibility prediction
alphafold3-pytorch
Implementation of Alphafold 3 in Pytorch
Dense-Homolog-Retrieval
Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval