pathology-image topic

List pathology-image repositories

BIRL

87
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26
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BIRL: Benchmark on Image Registration methods with Landmark validations

deepslide

476
Stars
135
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Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for...

DeepLIIF

144
Stars
55
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Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]

TMUnet

92
Stars
12
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Contextual Attention Network: Transformer Meets U-Net

compay-syntax

55
Stars
1
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:microscope: Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

Augmentation-PyTorch-Transforms

105
Stars
25
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Image data augmentation on-the-fly by add new class on transforms in PyTorch and torchvision.

brain-coloring

52
Stars
17
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BrainPainter - Brain Visualisation Software

pathology-images-analysis-using-CNN

49
Stars
32
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Scripts for https://www.nature.com/articles/s41598-018-27707-4, using Convolutional Neural Network to detect lung cancer tumor area

tissueloc

44
Stars
12
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Whole Slide Digital Pathology Image Tissue Localization

LabelSlide

15
Stars
3
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LabelSlide is a slide annotation tool and label object bounding boxes in virtual slides (generally used in pathology)