pathology-image topic
BIRL
BIRL: Benchmark on Image Registration methods with Landmark validations
deepslide
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for...
DeepLIIF
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
TMUnet
Contextual Attention Network: Transformer Meets U-Net
compay-syntax
:microscope: Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.
Augmentation-PyTorch-Transforms
Image data augmentation on-the-fly by add new class on transforms in PyTorch and torchvision.
brain-coloring
BrainPainter - Brain Visualisation Software
pathology-images-analysis-using-CNN
Scripts for https://www.nature.com/articles/s41598-018-27707-4, using Convolutional Neural Network to detect lung cancer tumor area
tissueloc
Whole Slide Digital Pathology Image Tissue Localization
LabelSlide
LabelSlide is a slide annotation tool and label object bounding boxes in virtual slides (generally used in pathology)