ome-zarr topic

List ome-zarr repositories

ome-zarr-py

151
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53
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Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

Rarr

34
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5
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A simple native R reader for Zarr Arrays

ngff-zarr

21
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4
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A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.

iohub

30
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7
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Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata

BatchConvert

16
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2
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A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.

zarrs_tools

15
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3
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Various tools for creating and manipulating Zarr v3 data with the zarrs rust crate