maximum-likelihood topic
BUSCO_phylogenomics
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
spatialreg
spatialreg: spatial models estimation and testing
CorBinian
CorBinian: A toolbox for modelling and simulating high-dimensional binary and count-data with correlations
deML
Maximum likelihood demultiplexing
ppca_rs
Python+Rust implementation of the Probabilistic Principal Component Analysis model
detection-estimation-learning
Python notebooks for my graduate class on Detection, Estimation, and Learning. Intended for in-class demonstration. Notebooks illustrate a variety of concepts, from hypothesis testing to estimation to...
dynamic-discrete-choice
Matlab package for learning to specify, compute, and estimate dynamic discrete choice models
pymle
Maximum Likelihood estimation and Simulation for Stochastic Differential Equations (Diffusions)
phylociraptor
rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference
AmpTools
A utility library for performing amplitude analysis on particle physics data.