genomes topic

Repository for the TRANSIT and TPP tools developed by the Ioerger Lab

mad-lab

GENA-LM is a transformer masked language model trained on human DNA sequence.

AIRI-Institute

Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named StORFs (Stop - Open Reading Frames)

NickJD

A simple command-line tool to download data from Joint Genome Institute databases

glarue

Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)

karel-brinda

A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.

guyleonard

Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]

karel-brinda