fsl topic
BrainPrep
Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.
clinica
Software platform for clinical neuroimaging studies
ICA-AROMA
ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.
AndysBrainBook
This repository contains the files that generate Andy's Brain Book on ReadTheDocs.
macapype
PNH segmentation pipelines based on nipype
brainextractor
A re-implementation of FSL's Brain Extraction Tool in Python
bids-tools
Tools for dealing with neuroimaging data in the BIDS structure
nipype-preprocess-on-brain-MR
The project is used to do preprocessing on brain MR images by using Nipype.
bspm
Utility MATLAB functions and wrappers for fMRI data analysis, mostly based in SPM12
pTFCE
Probabilistic Threshold-Free Cluster Enhancement of Neuroimages