eqtl topic

List eqtl repositories

singlecell_neuroseq_paper

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Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation

locuscomparer

112
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LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.

BRAINcode

17
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4
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Script and pipeline for BRAINcode project

CellRegMap

21
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3
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CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq

mrlocus

15
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8
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Older repo for MRLocus. See new website for software usage guide:

twas_sim

25
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Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.

scPower

42
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5
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Experimental design framework for scRNAseq population studies (eQTL and DE)

singlecell_endodiff_paper

15
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6
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Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression

MTWAS

15
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1
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R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"