Common Workflow Language topic

CWL documents describe workflows made of command line data analysis tools in a portable, reproducible, and reusable fashion.

List Common Workflow Language repositories

cwltest

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Framework for testing CWL tools and workflows

cwlviewer

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A web application to view and share Common Workflow Language workflows

tool-registry-service-schemas

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APIs for discovering genomics tools, their metadata and their containers

cwl-tes

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cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.

cwl-ts

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Typescript data model for Common Workflow Language

workflows

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Bioinformatics workflows developed for and used on the St. Jude Cloud project.

emg-viral-pipeline

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VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

janis

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[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

scriptcwl

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Create cwl workflows by writing a simple Python script