thierryjanssens

This enhancement would be instrumental as well to analyse scaffolds from a fragmented metagenome and parse the resulting annotations. I understand that prokka is not designed for annotating genetic material...

I am also running into this same issue. Upon importing tabular blast hits, some queries get an LCA of other Root, while the taxIDs of the blastn hits of these...

$ conda list # packages in environment at /mnt/scratch_dir/user/conda/envs/gff3tool_env: # # Name Version Build Channel _libgcc_mutex 0.1 main bzip2 1.0.8 h516909a_0 conda-forge ca-certificates 2019.6.16 hecc5488_0 conda-forge certifi 2019.6.16 py27_1 conda-forge...

Hi Robert, thank you. This creates a non-empty output: >0fe3e058-af74-41a3-a6ff-3dafc6d73f8c LN:i:775 RC:i:1 XC:f:0.000000 CGATGCTGCTTCGTTCAGTTATAAACTGGATCGAGGGCTGCGTCTTTTGACTAGGATGCTGGCGTAATGATCTAATGCCGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCTGGTGTTTGGGGTGTAAAACCCGTACGCACGCGTAAATGAACGTAGGTTGGGGCCTTCGGGTGCACAATCGACCGACTAACGATGTTTTCGGATAGGTTTGAGTAGAGCATAGCTGTTGGGACCCGAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCCGTCGATCGTCGAATTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAGAAACTCGTATCAGTTTATGAGGTAAAGCGAATGATTAGCGGTACCGGGGATGAAATGTCGCGCTGACCGATTTACAAAACTTTAAATGTATGAAAGTCCTTGTTGGCAATTGAACGTGGACATATGGATGAAGGGTTTCTAGTGGGCCATTTTGGTAAGCAGAACTGGCGATGCGGGACGAACCGAACGTGGAGTTAAGGTGCCGGAATGTGTACTACGCTCATCAGACACCACAAAAGGTGTTAGTTGTCTAGACAGCCGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAATGTGTAACAACTCACCTGCCGAGAAGATAGAGCGACAGGCAAGTCCTGGTAACTGGGACACAAGACTCG This is the content of the associated sam file: @SQ SN:0fe3e058-af74-41a3-a6ff-3dafc6d73f8c LN:775 @PG ID:minimap2 PN:minimap2 VN:2.17-r941...