theokirkland

Is recent data from April also available? I don't understand how to use the update.sh file - does that solve the issue?

error "external program called by OrthoFinder returned an error code: -4"

1

I am trying to run OrthoFinder version 2.5.4 on a Mac with the primary transcripts. I installed OrthFinder using conda. My command is (base) theoneal@MacBook-Pro ~/orthofinder_tutorial/proteomes $ orthofinder -f primary_transcripts/...

Install funannotate docker image

1

I am trying to install the current release of funannotate using docker according to the instructions at https://funannotate.readthedocs.io/en/latest/index.html. When I enter "docker pull nextgenusfs/funannotate" I get "no matching manifest for...

missing lib.tools

1

I am trying to run SUPPA on a mac. I have the program installed with conda. When I run the following command theoneal@MacBook-Pro ~/opt/anaconda3/pkgs/suppa-2.3-py36_1/bin $ python3 suppa.py --help I get...

Segmentation fault 11

6

I am trying to assemble four relatively small bam files and getting a segmentation fault: 11 error. I can assemble two of them but the other two give this error....

error with example file

1

Thank you for making your software available. I have tried to run the example script. I am using an M1 Mac OS 13.2.1. When I run theoneal@MacBook-Pro ~/Finder-finder_v1.1.0 $ run_finder...

path problems

5

I installed meme with macports on a mac The program is in /opt/local/share/meme-5.5.0. I used this in R options(meme_bin = "/opt/local/share/meme-5.5.0") when I check_meme_install there is a green check mark...