cellrank

cellrank copied to clipboard

Proper use of the "Lineages" Parameter for Lineage Drivers

10

Hello, I am attempting to run compute_lineage_drivers(), but no matter what value I set for "lineages" I keep getting a value error.: ``` File "", line 421, in combined_kernel_analysis File...

jwalewski

In cases the same cluster is estimated as initial and terminal states

4

... Hi Cellrank team, Thank you for developing this wonderful tool! I have a general question about initial and terminal state estimation using GPCCA. In short: I am wondering if...

st-tky

Update type hinting

3

## Description Update type hinting in functions using simplified syntax such as PEP 604 (`X | Y`), `list[]` instead of `List`, `None` instead of `Optional`, etc.

WeilerP

Test CI fail with `pytest==8.1.0`

1

## Description Since `pytest==8.1.0`, the test CI fails; only the plotting tests seem to be affected.

WeilerP

Question about Transition Matrix and Initial States

1

Thank you for developing a great suite of tools to investigate cell fates in developmental biology! ### Our Dataset I am using CellRank and Moscot to identify and map cellular...

jennylsmith

Compute and plot gene module scores over pseudotime

2

...

sohrabsa

...ERROR: No .egg-info directory found, it appeared when I was installing cellrank with pip ```python ...!pip install cellrank ``` ```pytb ...Collecting cellrank Using cached cellrank-2.0.4-py3-none-any.whl.metadata (8.0 kB) Requirement already satisfied:...

FessenSimon

Functsions related to Expression Trend not working

1

I am running the tutorial code for CellRank and came across an error while running the functions for trend expression, Can you please help me with the same Code: ```python...

JyoRoy21

can i use cellrank2 on scrna dataset which which i have computed a pseudotime and vector filed using sctour?

1

... hello, can i use cellrank2 on scrna dataset which which i have computed a pseudotime and vector filed using sctour?

JIMCAOWJ