Tengfei Yin

@davidroberson yes, we will first try to render native rabix graphics, alternatively like Nan said, use basic R graphics to visualize directed graph workflow is also possible.

请问这个是印刷版里的错误吗？我没有现书所以看不到，这个其实是我们邮件讨论和更正过的错误。。。解决方法就是如你所说的调换位置。 On Fri, May 31, 2013 at 4:02 AM, Aaron Ouyang [email protected]: > P161 > 第六行 vp4 第八行 vp5 > 报错 Error in valid.charjust(just) : invalid horizontal justification > >...

应是右下角那个要改吧，而且0.9.3命名完全改变了，具体请运行下面命令看典型的2*2的图形 library(ggplot2) mt z cells name grob > 1 0 (1-9,1-8) background rect[plot.background.rect.808] > 2 1 (3-3,4-4) strip-top absoluteGrob[strip.absoluteGrob.738] > 3 2 (3-3,6-6) strip-top absoluteGrob[strip.absoluteGrob.744] > 4 7 (4-4,3-3) axis-l...

谢谢，这个不知道是疏漏还是ggplot2小的升级导致的错误，需要查看他们的commit log貌似现在默认color是NA也就是透明的，所以应该改为 `hgram + theme(plot.background = element_rect(size = 2, color = "black"))` 应该就可以了 On Fri, May 31, 2013 at 12:27 AM, Aaron Ouyang [email protected]: > 环境 > - win 7...

Hi I am not sure what you trying to do , are you trying to show segment on top of it or want to combine range for DAH115 and show...

Hi Can you try something like this, in plotGrandLinear function, you can pass a highlight.gr argument to highlight some color, you pass your GRanges to that argument, any points that...

this actually was asked in bioc list two days ago, the current workaround is attached below, in next release we will have a parameter building in to do this. p...

and you could use "space.skip" parameters in plotGrandLinear() function to add more space between chrom and one another key, please assign seqlength to your granges object, otherwise, the chromosome space...

if you mean how to add-on more data into manhattan plot coordinate easily, man this is what I am struggling with right now ... and trying to finish it by...

actually this conversation is helpful for me to understand the your case, is your request more like: adding data layer by layer on coordinate "genome"? something like autoplot(data, ... coord...