Tengfei Yin

for my own case, I just need a way to trace back to some input files like reference file they (bam, vcf files) are using, or if we have a...

heatmap in circular view, as "geom"?

4

Now of course you can use rect geom to mimic heat map easily, maybe a more general heartmap geom should be there for circular view too.

bug from jason

4

Hi Michael, I found a bug in the bbgio function getLimits: NA values present in the y values give NA for both min and max values. This leads to an...

I was wondering if it would be possible to plot genomic features as arrows in circular layout? geom_arrowrect() allows this for linear regions, but I have a plasmid that I...

Hi Thanks for replying, I'll try to explain what I'm doing and why. The group I work in is producing a lot of DNA sequencing data in cancer samples. When...

autoplot,VCF or SummarizedExperiments need more general idea and suggestions

1

1. currently need to specify "geno","fixed"... types, different type indicate different data subset and different method. 2. should I start withh autoplot, SummarizedExperiments first? then think about other class which...

raster need equal length I guess, need to do some tricks to smooth them, for SNP data it should be fine, always single base unit. speed is the major challenge...

score first