Haibao Tang

@dhwnai2410 this is an outdated version. Would you mind trying to upgrade docker to a more recent version?

Not sure why the compile failed. It works for me and other users. I have pushed a compiled image `tanghaibao/hla`. Would you test it out? ```bash docker pull tanghaibao/hla docker...

@zd200572 The error message suggested that there's not enough memory for this run. I understand the starting bam size is only 170Mb but the R script we currently used consumes...

@DarioS thanks for the bringing this up. I'll look into this.

@melnel000 Try to add ``--full`` in the command. Haibao

@bcal94 Did the memory issue occur during `get-reads-alt-unmap.sh` or during the HLA step?

I have not yet seen this before - if you can pin down at which sub-step during HLA this occurs, it might help me diagnose. And please feel free to...

@bcal94 Thanks for sending this along - I'll take a look when I get back to work this week. Haibao

Switched to `pyproject.toml` based installation so `setup_helper.py` is no longer needed. However, we do not have plans to support Python 2.x moving forward. Closing issue.

@Adamtaranto Thanks for digging into this. I have not looked at this issue recently but I also recall something weird with resetting `usetex` last time I checked.