Haibao Tang

@illumination-k Thank you for the issue report. I added the fix that considered the `log` keyword.

@dvklopfenstein Longer-term, we could move to using `logging` instead of using `prt` and `log` parameter throughout the code, as suggested in #159.

@chrispam10 It is a bit unclear from your question - are you asking whether `goatools` can generate such JSON file? or use such JSON file as input?

@ThHarbig This syntax is "Exception Chaining" https://docs.python.org/3.9/library/exceptions.html and should work from Python 3.5 to 3.9. Would you please help checking your Python version (`python --version`)? > When raising a new...

@wu-diana Should have been fixed in the commit referenced here. Thanks for the heads up.

@ialbert Thank you for posting your thoughts here. This is what's currently on README with regard to the usage of `find_enrichment.py`. I think you perhaps missed it, but if you...

I'm pinning this issue - our goal is to make this a bit easier to use for everyone. While we may still be falling short in that regard, I think...

@radusuciu Good point and thank you so much for pointing this out - looking forward to your PR on this.

@harish0201 Currently, our DAG plotting style is different but we may be able to create a custom style like TopGO. If you compare it with: https://github.com/tanghaibao/goatools/tree/main/notebooks/images I'm not super familiar...

@cmungall Haven't talked with you in a while since we wrote up the GOATOOLS paper. I'm cleaning up some old issues in the repo... I just found that we had...