stnava

Fsl dependency is non starter due to licensing issues. On Fri, May 19, 2017 at 7:14 AM Robert Smith wrote: > But motion correction requires that the software returns the...

Very helpful ! Thank you On Fri, May 19, 2017 at 8:29 AM Robert Smith wrote: > Fsl dependency is non starter due to licensing issues. > > If it's...

my preliminary relatively large scale (2000 images) testing looks ok for these parameters .... will look more soon but perhaps it would be worth putting a beta version into ANTsR,...

nice - I also added rank_intensity/rankIntensity to antspy/R .... remains to be seen how useful they are.

I made a few recent commits that should address this - note : I also normalized images in [0,1] range for the registration itself ... output is like: ``` ......

in brief, we ran out of space on pypi which limits total file storage. I wasn't aware of this restriction until yesterday. surely, I got rid of too many old...

the interpolation calls choices are very inconsistent. I believe we have * interpolator * interp_type * interpolation maybe others in addition to mixes of case and numeric encoding of the...

`multiLabel` can be deprecated. the interpolation names should be the same as what C++ ants expects. and backward compatible as much as possible. a lot of the issue is in...

you can generate pretty extreme deformations in antspy. here is an example: ```python import ants import antspynet import ants image1_list = list() image1_list.append(ants.image_read(ants.get_ants_data("r16"))) image2_list = list() image2_list.append(ants.image_read(ants.get_ants_data("r64"))) input_segmentations = list()...

I am not sure what you are trying to do here but the first thing that might help would be to get rid of the nibabel calls. just use `ants.image_read`...