stnava

@ntustison , @bkandel , @dorianps, @jeffduda , @cookpa substantial progress towards passing R cmd check ... it's not there yet but i eliminated several "mysterious" warnings, notes and the like...

for vignettes: will follow http://stackoverflow.com/questions/24861970/using-rmarkdown-as-a-vignette-engine

Yes. For cran check, we must list all dependencies ... we know how to reduce these for future work but for now , need to be explicit. Can relax in...

Another useful resource: http://r-pkgs.had.co.nz/description.html Regarding suggests, imports, etc ... we could do a better job of these ... am working on it. On Feb 3, 2015 6:48 PM, "brian avants"...

Explanation of current dev/check system: - hide utility functions by using .functionName - these are still accessible via ANTsR:::.functionName in the R user (scripting) space - these can be called...

Currently, there are a few undocumented code bits that @jeffduda will contribute. There are _many more_ **inconsistent** documentation and usage functions. This is where the most help is currently needed...

Unrelated ... probably just need clean build. On Feb 5, 2015 11:21 AM, "dorianps" [email protected] wrote: > I am having trouble with updating ANTsR in cluster. This is what happens...

We crushed it over the last few days. Here is the new R CMD check result: - using log directory ‘/Users/stnava/Downloads/temp/ANTsR.Rcheck’ - using R version 3.1.2 (2014-10-31) - using platform:...

Current state on OSX Yosemite: - all examples run well with dependencies installed (and likely even without, though i've not tested this recently) - almost all code is documented (...

ok - major progress: **no documentation inconsistencies** for the first time ... but still some undocumented code: Undocumented code objects: ‘antsCopyImageInfo’ ‘antsGetPixels’ ‘antsMotionCorrStats’ ‘antsSetPixels’ ‘antsTransformIndexToPhysicalPoint’ ‘antsTransformPhysicalPointToIndex’ am reading through the...