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`fq lint` fails on large files

3

Hi, It seems `fq lint` fails on large FASTQ file due to below error: `fq lint XXX_1.merged.fastq.gz XXX_2.merged.fastq.gz > XXX.fq_lint.log.txt` ``` Command error: Error: I/O error Caused by: corrupt deflate...

bounlu

I'd love to write a MultiQC module for this, but in order to facilitate this, would it be possible to write outputs in a JSON format for easier parsing? e.g....

apeltzer

Reference genome support for fastq generation

2

Hi friends! This is more of a feature request than an issue. Have you considered implementing fastq generation from a reference genome? I think it would be a useful feature...

drkennetz

Missing newlines are not caught

3

Hey guys, thx for this cool tool! I just stumbled over a weird error (using a Julia-Program). ``` ERROR: LoadError: ArgumentError: malformed FASTQ file Stacktrace: [1] read!(rdr::FASTX.FASTQ.Reader{TranscodingStreams.NoopStream{BufferedStreams.BufferedInputStream{IOStream}}}, rec::FASTX.FASTQ.Record) ... ```...

KuechlerO