Daniel Standage

> Duplicate of #1698? Yes!

In particular, I don't see any way to adjust the lengths of the reads generated.

It makes sense that we would want to train an error model using reads of the desired length. I'll let you know if I find a relevant data set.

Thanks for the response! > It is also considered a legacy format at this time Good to know. I assume you're not replacing DAA with an alternative archive format, correct?...

With the planned features, will it be possible to reformat Diamond output to get both "BLAST pairwise" and tabular with staxids? (Thank you for your responses and your patience with...

Wonderful. Thanks for your excellent work on this tool!

I developed the [rsidx package](https://github.com/bioforensics/rsidx) for this purpose, although I've never scaled it up to >1M rsids in a single query. It might need to be broken up into smaller...

Yes.

Sorry, this is hard to test at the moment. I updated Bowtie2 and Tophat, but without updating Cufflinks I'm still seeing the problem. Building from source is a bit more...

It's been a mess, but I've been able to install the prerequisites (including the outdated Boost 1.55 alongside the latest Boost) without breaking anything else on my system. However, `make`...