Daniel Standage

Results 103 comments of Daniel Standage

Just adding a comment to this ticket so I can see subsequent updates to it. Thanks!

Regarding [your question](https://twitter.com/sickill/status/409727182647209984), take a look at the two links in my Twitter post above. WordPress.org refers to the blogging software that you can download and host yourself. The shortcode...

With respect to these two ideas, dropping the entire node/graph _feels_ like the safer thing to do, perhaps because after seeing one issue we're less confident that the rest of...

Along with these would it not also be helpful to query how many values the attribute has? Grabbing the nth attribute value is only helpful if you know the maximum...

Well, just as an isoform has a single CDS even if it's split across multiple exons (and thus requires multiple entries in the GFF3 file), it also has a single...

Functionally that would work. In the general case, though, I wonder whether multifeatures of different types should force creation of a new block or whether they could be collapsed on...

Again, I think considering feature type is important. I think I agree with the inclination you stated in your final paragraph--to simply draw multi-features on top of each other. In...

I think that's the most sensible approach.

I can reproduce this. With the _S. invicta_ data set, the first pass through **gt gff3** gets everything right except a handful of **cDNA_match** multifeatures, which have the same start...