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Published 20 hours ago • verified publisher icon ncbi

How to get CHR & POS info on Hg38 using rs Id information?

Open Mahantesh-Biradar opened this issue 2 years ago • 2 comments

I have a list of SNP rs ids (>1M) for which I would like to find the CHR & POS information. Can you please suggest a suitable tutorial or Jupyter notebook? Thanks in advance

Mahantesh-Biradar avatar Oct 12 '21 08:10 Mahantesh-Biradar

I developed the rsidx package for this purpose, although I've never scaled it up to >1M rsids in a single query. It might need to be broken up into smaller batches, but should still give very good performance.

standage avatar Oct 12 '21 13:10 standage

Thanks, Daniel, let me give it a try.

Mahantesh-Biradar avatar Oct 12 '21 14:10 Mahantesh-Biradar