Daniel Standage

Bingo. Installing cython manually before running `make install`, I can import khmer with no problem.

So...we could easily add Cython to `doc/requirements.txt`, but really that's already handled by `make install-dependencies`. Any ideas about how to get ReadTheDocs to run `make install-dependencies`, or should we just...

After a bit more thought: shouldn't we be distinguishing between installation dependencies and development dependencies? The DEVPKGS variable and the `make install-dependencies` target is great for setting up a dev...

\*facepalm\* Updated. See https://github.com/dib-lab/khmer/pull/1734#issuecomment-308520289.

This issue is cropping up for me again. The kevlar docs build on ReadTheDocs is [failing again](https://readthedocs.org/projects/kevlar/builds/8301299/), and the only relevant difference I can see is that they recently upgraded...

Just tried Conda: get `ImportError: No module named 'khmer._oxli.assembly'` when attempting to run a script and `ImportError: No module named 'khmer._khmer'` when trying to import from the Python interpreter.

> I'm game. In theory.... :) w00t! > I started this some time ago...Based on scikit-build... Cool. Would you recommend we pick up from here, or is there value in...

I just lost a few hours of my life troubleshooting the most bizarre behavior. Turns out if you open the Python interpreter and try to `import khmer` from within the...

Thanks for the report! The issue isn't the read lengths themselves, its the read IDs. At the moment khmer only recognizes paired reads if the entire read ID (including stuff...

One of the alternative conventions khmer supports (or is supposed to support) is `@name 1:blah blah blah` and `@name 2:blah blah blah`, which is compatible with appending metadata to the...