ColabFold

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How can I run a complex prediction longer than 1000 or 1400 bp?

2

## Expected Behavior ## Current Behavior ## Steps to Reproduce (for bugs) Please make sure to reproduce the issue after a "Factory Reset" in Colab. If running locally ypdate you...

RuiTekiZhai

“Call MMseqs2 to get MSA for each gene” fail

3

## Expected Behavior AlphaFold2_complexes ## Current Behavior AlphaFold2_complexes failed TypeError: cannot unpack non-iterable Msa object Help！！！Thank you very much！！！

wangpengfei2021

Different outputs between mmseqs2 API and colabfold_search

1

Hello ! I wanted to run the MSA calculation of a set of proteins to do structure prediction. I used the script that calls the mmseqs2 API that colabfold uses...

YFeriel

Predicting a complex with pair_mode="unpaired" fails

1

## Expected Behavior Runs fine ## Current Behavior The program fails, due to the lack of the paired_msa variable. ## Steps to Reproduce (for bugs) - Predict a complex using...

moritzschaefer

Multimer IPTM score

4

Hi there, quick question, when modelling complexes, are the IPTM scores stored somewhere in the standard output files? or are they just used internally for the scoring/ranking? Thanks

xvazquezc

RESOURCE_EXHAUSTED: Out of memory

1

## Expected Behavior Should produce models for our sequence (912 AA). ## Current Behavior Stops running at "Run Prediction" after running out of memory. ## Steps to Reproduce (for bugs)...

a-lewis-acid

multimer model error:config_dict.py", line 903, in __getitem__ field = self._fields[key] KeyError: 'data'

1

## Expected Behavior could predict the protein complex structure ## Current Behavior error occurred. ## Steps to Reproduce (for bugs) I am following the localcolabfold and I am able to...

liuqs1990

Output o PDB for each recycle step

1

## Expected Behavior It would be great if a PDB could be generated for each recycle step. That would enable one to see how many recycle steps are needed to...

ajasja

Spaceless MSA options

1

konstin

## Expected Behavior When using custom templates only models 1 and 2 are interesting. I would propose and option (in the Advanced Settings) to select only a subset of models....

ajasja