sokrypton
How can I run a complex prediction longer than 1000 or 1400 bp?
Expected Behavior
Current Behavior
Steps to Reproduce (for bugs)
Please make sure to reproduce the issue after a "Factory Reset" in Colab.
If running locally ypdate you local installation colabfold_batch to the newest version.
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ColabFold Output (for bugs)
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Context
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Your Environment
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I am trying to use ColabFold in Google notebook to make a dimer or trimer model. But my sequence is >600bp. When I was allocated Tesla K80 it always gave me the error telling "list of index out of range", which I guess that the desired pdb file was not created due to the length. I am wondering if this could be solved by buying ColabPro for a "faster GPU".
The limiting factor is the RAM on the graphics cards. ColabPro is worth a try, because you can get a better GPU allocated. You can also try to run on the CPU (it will take a long time) or run locally.
