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sneumann
This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
After chromatographic peak detection I find myself frequently looking through identified peaks to see whether they make sense or are just noise (I guess that sounds familiar to most people)....
Hi, I used the feature chromatograms function with different features range for LC-MS data. My question is how to merge these XChromatogram files into one XChromatogram file. thanks! Hees
I am using the old XCMS commands. I know I should upgrade, but I am slow... fillPeaks.chrom(xset) gives me an error. I have seen issue 301, and the error seems...
Hi team! I've been noticing some warnings showing up when doing the tunein step of peak calling direct infusion data through the findChromPeaks function. I know this is probably more...
This is related to issue #375 . Basic functionality is implemented with the `reconstructChromPeakSpectra`. This function assigns all MS2 chromatographic peaks to an MS1 chromatographic peak if the correlation of...
Enable analysis of data independent acquisition (including SWATH) data. - [x] peak detection in pockets/isolation windows. - [x] data structures for identified chromatographic peaks (issue #346). - [x] functionality to...
XCMS team, I was recently re-reading the [Warpgroup](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5013975/) paper from Gary Patti's group. I think this algorithm came out before xcms3. I was wondering if any of these ideas would...
Hello XCMS team, I have encountered a strange error while running the diffreport() function. I have four classes of samples (two treatments at 0h and 4h) that I am working...
Hi I used the demo code in the help page of findChromPeaks. The error has happened. Do anyone give some helps? library(faahKO) library(xcms) fls
Hi XCMS team, I finally got around trying the and improved XCMS3 interface :-) One thing I quickly noticed is that with some data files I get significantly different amounts...
