MetaMorpheus
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Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
See this issue https://github.com/smith-chem-wisc/MetaMorpheus/issues/1921
Possible solutions are: -rescore each PSM using most intense fragment instead of closest mass -find most intense fragment in MetaDraw before annotation
MetaMorpheus: version 0.0.305 Data files were processed on a computer running Microsoft Windows 10.0.18362 with a 64-bit AMD Ryzen 7 3700X 8-Core Processor processor with 16 threads and 0GB installed...
More a clarifying question: We're attempted an open mod search using a non-uniprot database (a gi| formatted database and some other custom protein names) and getting odd results. Does MetaMorpheus...
Need a space after the MM url https://github.com/smith-chem-wisc/MetaMorpheus/blob/b9b0116324e7280798944d9d6b34f5c943ed350c/TaskLayer/MetaMorpheusTask.cs#L475