MetaMorpheus

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Zooming function exists, but not currently accessible to users.

zrolfs

Add support for Bruker Timstof Prot

8

trishorts

Ion annotations can be messy; give an option to remove annotations Before:  After: 

zrolfs

Normalisation at the peptide level

1

Hi, I'm processing a peptidomics data set and was wondering if, when I select 'normalise data', does it normalise only the protein intensities or the peptide intensities too? Does it...

JesseIL

YulingDai

Unintuitive proteoform/protein output

1

 I made a file that contained 8 PrSMs at each of the proteoform ambiguity classification levels (1, 2A, 2B, 2C, 2D, 3, 4, and 5). 8 PrSMs were reported...

zrolfs

Commandline improvements

10

- [x] Dockerize it - [x] Make smithchemwisc Docker account - [x] Automatic builds of docker image from the release branch on Docker Hub - [x] Update readme for .NET...

acesnik

[Task1-SearchTaskconfig.zip](https://github.com/smith-chem-wisc/MetaMorpheus/files/6132556/Task1-SearchTaskconfig.zip) The variable mods in this toml file cause a crash in MetaMorpheus (at least when used with a .mgf file) in a regular search.

trishorts

Glyco Search

4

Hi MetaMorpheus developers, Is there any tutorial for running the MM tool for o-linked GlycoProteomics? I tried the MM for few o-linked enriched raw files (HCD fragmentation) using two tasks:...

fazeliniah

It would be nice to be able to load all data into MM. Generate the design file. Copy those contents into excel. Edit them. Then copy them back. https://docs.microsoft.com/en-us/windows/uwp/app-to-app/copy-and-paste

trishorts