MetaMorpheus

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Hello, When trying to run an analysis using MGF file it crushes with this next error: Run failed, Exception: Input string was not in a correct format. However, when using...

tzaquin

water and ammonia loss peaks are prevalent in tandem mass spectra. However, including them during the search phase with primary ions leads to a loss in sensitivity. But, once the...

trishorts

Added isotopic envelope information to PSMs for use in PEP calculations

1

Appveyor wasn't building, hoping re-opening the PR will help

Alexander-Sol

DOTF is implemented as the default in classic search. Errors in unit tests produced from this change are noted with a potential source.

zdanaceau

Added functionality to classic search to allow for the use of decoy on the fly (DOTF). This should be entirely conservative of previous functionality with the exception of a change...

zdanaceau

Alexander-Sol

add precursor isotope profile feature to each psm

2

**What would you like to see done in MetaMorpheus?** **Please describe any alternatives you've considered** **Additional context**

trishorts

Hi all, I'm currently benchmarking a variety of different proteomics search engines (Comet, MSFragger, IdentiPy, etc) for both speed & # of PSM identifications. I am struggling a bit (without...

lazear

Adding a new option in the search task window to adjust the required isotope threshold in FlashLFQ. MzLib still needs to be updated to accommodate this parameter.

Alexander-Sol

Proteins in different samples types with the exact intensity values.

2

Processing data from three co-IP different sample types, using MetaMorpheus v0.0.320, and searched against the Mouse proteome database (Mouse_SP_Jan2022), we noticed that some of the identified proteins (in the proteinGroups...

AmirWIS