proxysnps

proxysnps copied to clipboard

Error with tabix.iobio.io

1

Hi, I am getting this error... > Could not resolve host: tabix.iobio.io ... when running this code: `d

swvanderlaan

Feature request: add in alternative references

1

Hi, It would be great to have (detailed) description of what is needed to get this package to work with alternative references. For instance, in-house references, or HRC, or UKBiobank,...

swvanderlaan

Feature request: signed r

1

Hi, Would it be possible to include the signed r's, along with the r-squared? It would facilitate plotting LD heat maps. Thanks! Sander

swvanderlaan

Window size

1

Hi, Just for clarification: is the window size read like ± xxxx kb around the index variant? Thanks! Sander

swvanderlaan

## Beep boop. Your images are optimized! Your image file size has been reduced by **43%** 🎉 Details | File | Before | After | Percent reduction | |:--|:--|:--|:--| |...

imgbot[bot]

Hello, I have this error when checking proxies for 1 SNP: Error in if (!is.numeric(start) || start < 1) { : missing value where TRUE/FALSE needed Any suggestion? Thanks

shiccae

error : no package called 'myvariant'

1

Hi, I'm getting the following error, using proxysnps in R studio: ```r d Error in loadNamespace(name) : there is no package called ‘myvariant’ ``` Any thoughts? Thank you! Cassy

robinc3

Memory usage

3

Hi, I would need to find proxies (r2>0.8) for about 8000 snps from about 300 genomic regions (region defined so that the distance between consecutive snps is less than 1...

TaruMuranen

Selecting correct query info when multiple hits returned

1

In main function: v 0) { chrom

mreppell

Hi, I noticed that when I query an indel (e.g. get_proxies(query = "rs148722713")), get_proxies() identifies a wrong SNP (rs1467204) to query and still returns a set of variants and their...

yluo86