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Published 20 hours ago • verified publisher icon slowkow
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:vertical_traffic_light: Run Picard on BAM files and collate 90 metrics into one file.

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ERROR: Please install the 'stats' program

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I'm having a similar issue to [https://github.com/slowkow/picardmetrics/issues/6](url) . When I run picardmetrics I get: `2020-11-18 08:16:00 picardmetrics config: '/cd16/software/picardmetrics/picardmetrics.conf' ERROR: Please install the 'stats' program https://github.com/arq5x/filo` The output of `which...

schmittel avatar schmittel

Problem with collate function

6 comment

Hi! Thanks for this wonderful application, it helped me a lot. However, I ran into an issue with the collate function I can't figure out to solve: picardmetrics collate filename...

kitzcode avatar kitzcode

Does it work on single-end reads?

4 comment

Hi, I was trying to run this tool on bam files generated from both SE and PE reads. PE reads seem to work fine, but I am having troubles with...

naikai avatar naikai

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verified publisher icon slowkow

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:vertical_traffic_light: Run Picard on BAM files and collate 90 metrics into one file.

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