Stephen Larson
Stephen Larson
A dataObject such as a neuron may have a variety of properties. Currently, in order to look up what evidence is associated with a given object, you will have to...
- [ ] ventral nerve cord - [ ] motor neurons - [ ] muscles cells - [ ] muscle receptors (for amplitude of PSCs) - [ ] excitatory nicotinic...
This test was taken out of the readme to get a build to work, but needs to be put back in > See what neurons innervate a muscle:: > >...
Prolog inference code has been created to fill in gaps of unknown neurotransmitters and neuroreceptors for each neuron. Let's turn this into a DataTranslator: - [ ] run a SWI...
The [data sources](https://pyopenworm.readthedocs.io/en/latest/data_sources.html) page should get updated along with the new ion channel content. The source [is here](https://github.com/openworm/PyOpenWorm/blob/master/docs/data_sources.rst). It should be easy to follow the pattern that is already laid...
They are reaching out to open data organizations to share data: https://www.wikidata.org/wiki/Wikidata:Wiki_Loves_Open_Data We could probably have an interesting integration where we pull our PyOpenWorm graph out of WikiData and use...
We want bioparameters associated with ion channels as well as metadata indicating level of certainty to appear in PyOpenWorm so that they can be read in the dashboard. Examples of...
not all neurotransmitters are filled in anymore after #235. We need to either reincorporate them directly into the [modified celegans db dump](https://github.com/openworm/PyOpenWorm/blob/reworking-references-and-sources/OpenWormData/aux_data/Modified%20celegans%20db%20dump.csv) or we should do #234 and re-infer the...
We currently have a start on a [docker image that contains PyOpenWorm](https://hub.docker.com/r/openworm/openworm_test/). Inside that image is the [dev version of the master_openworm.py script](https://github.com/openworm/OpenWorm/blob/development/master_openworm.py#L14) The first step of this script is...
The library should probably be on a regular release cycle. Let's decide what that should be and how to handle versioning.