Stephen Larson

Make it so only one movie file, the one intended to watch, is in the final output directory

Make the output less verbose with regards to STDOUT and STDERR and more explanatory for the user.

Produce Behavioral Figure A + simulated match

21

Forward Reverse with Tap on Wild Type. Can do a speed graph showing a positive and negative direction. Involves Sibernetic combined with c302, with Tap Withdrawal Circuit enabled.

Produce key nervous system circuit figure + simulated match

4

This would come from a sub-circuit of the c. elegans. Tap withdrawal may be a good candidate. Would compare to c302 output during behavior.

Produce muscle cell electrophysiology trace figure and compare with simulated match

6

Would show activity of the muscle cell and compare to real data. Two papers in the muscle model repo have data for comparison that can be used to produce this...

Produce global nervous system activity figure + simulated match

1

This would demonstrate c302 activity during movement (during any of the behaviors) and compare to data from Kato et al. or similar recorded data

Produce Channel A I/V curve comparison figure

1

Compare the current voltage relationship of a key ion channel to what is created by our simulated version in the model.

Determine Ion Channel Default Lists for Muscle Cells and Key Neurons

1

We should accumulate lists for muscle cells and key neurons of ion channels that we need to place into the muscle cell model and to use as defaults for the...

Compare the current voltage relationship of a key ion channel to what is created by our simulated version in the model.

Compare the current voltage relationship of a key ion channel to what is created by our simulated version in the model.