Stephen Larson
Stephen Larson
Currently the ion channels we have in the model are known to be simplifications. We'll close this issue when we have found some references that tell us what channels should...
Currently, a notebook that executes one of the muscle models being run out of c302 is [here](https://github.com/lungd/CElegansNeuroML/blob/docker-notebook/CElegans/pythonScripts/c302/notebooks/RunMuscleModel.ipynb) We want to fit this to existing data. Figures are [here](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3039263/figure/fig01/) Ideally we'd...
We currently have a process to run the [iv_analyse.py](https://github.com/openworm/BlueBrainProjectShowcase/blob/master/Channelpedia/iv_analyse.py) script on the output of the [analyse_ca_boyle.sh](https://github.com/openworm/muscle_model/blob/master/NeuroML2/analyse_ca_boyle.sh) script. This produces a figure. We'd like to augment this process with an automated...
Here's the figure:  Key points to test: - Run the muscle model in voltage clamp mode - modulate voltage for ~1s in...
- [x] Better introduction to the repository as a whole, its purpose, what it is trying to accomplish - [ ] Instructions on how to run the vclamp.py and explain...
A first version of the muscle model is currently out on live.geppetto.org under the default samples. There are still several things that need improving with this. I've asked several questions...
Moved from a follow on to #13 @pgleeson wrote: > It would be great to get another Python script to print out the corresponding values in the python/matlab impls vs...
Do you guys see any reason not to merge to master?
A contributor is interested in expanding the size of the environment but doesn't know how to increase the number of liquid particles. Can this be made configurable or at least...
How would a user access the position of the worm in each step while running sibernetic? Can we add this to the documentation? cc: @a-palyanov @skhayrulin @HamzaTChaudhry