Shaun Jackman
Shaun Jackman
I'll check that Homebrew installs the Jellyfish config.h file.
@danielhenrymantilla Thanks for this work, Daniel. Gentle nudge. I'd love to see this PR merged.
The YAML configuration to use an en dash is ```yaml rangeDelim: "–" ```
See https://github.com/lierdakil/pandoc-crossref/issues/101
The ability to reference these figures from the main material would be my next killer feature. I'm done with this paper :joy:, but for my next one, I'll write a...
> `pandoc -F pandoc-crossref -F pandoc-citeproc ~/manuscript/*.md -o test.html` That's not a bad option. I'd just need to split the resulting document back into its components, i.e. main material and...
``` --fragmented Reference genome may be fragmented into small pieces (e.g. scaffolded reference) --fragmented-max-indent Mark translocation as fake if both alignments are located no further than N bases from the...
```diff --- quast-lg -es --fast --large -R fly.chr.fa assembly.fa +++ quast-lg -es --fast --large --fragmented -R fly.all.fa assembly.fa # contigs 1777 3307 Largest contig 27246440 831740 Total length 136770791 132088273...
Running `quast-lg --fragmented --fragmented-max-indent 50000` produced the exception… ``` File "/gsc/btl/linuxbrew/Cellar/python@2/2.7.15_1/lib/python2.7/optparse.py", line 809, in take_action self.callback(self, opt, value, parser, *args, **kwargs) File "/gsc/btl/linuxbrew/Cellar/quast/5.0.2/quast_libs/options_parser.py", line 87, in set_fragmented_max_indent % qconfig.extensive_misassembly_threshold, to_stderr=True,...