Justin Sing

> Hi, I'm having issues with all versions, including 3.9. Is there a solution to this problem? Hi, this seems to be an issue with the latest major release of...

Hi, You may have to use the legacy workflow which supports TSV, [pyprophet legacy workflow](http://openswath.org/en/latest/docs/pyprophet_legacy.html). Or alternatively, you could convert the SWATHAtlas TraML file to a sqlite-based PQP file, which...

Hi, It's a little hard to say what the issue might be. The error indicates that one of the OSW files is currently being operated on (i.e. database is locked)....

I would suggest downloading via [PyPi](https://pypi.org/project/pyprophet/), using `pip install pyprophet`. This will contain the most recent updates of PyProphet which is inline with this repository.

> This is completed in previous major refactoring Yip, the backend code is complete, but not yet implemented in the GUI. If it's still something we want part of the...

I kind of like the config interface to avoid having too many parameters in the method call, unless we use **kwargs to pass parameters directly to the plotting (bokeh figure/...

I have noticed this issue as well, sometimes you have to click the extract button multiple times for it up clear the cache of the previous parameters. Not sure if...

I get this error too when using the streamlit cloud version, but now for the local version though :thinking:

It currently is using [vbar](https://github.com/Roestlab/massseer/blob/b083b721cbff9704d8ee58a1b895f345d7184398/massseer/plotting/InteractivePlotter.py#L504)

Hi, I don't think you are using the correct command for creating a singularity contained from a docker image. In your command, you left out the output file for saving...