Justin Sing

> [@singjc](https://github.com/singjc) > > Hi, Thanks for feedback. > > I checked docs link you sent. However, That links to Bokeh Plot, Not Plotly plot. > > Could you check...

Yes, the current implementation does both: distributes registered pyTOPP tools as part of the OpenMS build (if building with `cmake -DPYTOPP=ON`, i.e. pyTOPP tool executables will live alongside other TOPP...

> wow, massive PR. As far as I can judge, this got is in the right direction. Some of the CTD handling has some rough edges and worth discussing. I...

Ahh okay, shouldn't be too hard to generate a markdown based doxygen file, I can look into that. Before we proceed further though, maybe we can discuss more at the...