Sidhant Chopra

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icon company Yale University icon location New Haven, CT, USA & Melbourne, Australia icon location Neuroscientist and psychologist interested in psychosis, neuroimaging, networks and better treatments.

Results 5 issues of Sidhant Chopra

Utilising s2v parameters in eddy_config.json / Add slice groups eddy

9 comment

Hi, I am trying to apply slice-to-volume correction using eddy. However, the [required attributes](https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/eddy/UsersGuide#A--s2v_niter) are not considered appropriate within the eddy_params.json file. My eddy_params.json file: `{ "flm": "linear", "slm": "linear",...

Visualising volume data with surface boundaries

3 comment

First up - amazing package, thank you so much for making this - it has been much needed and is very welcomed! I was wondering if there is currently a...

enhancement

Add subcortical structures

1 comment

maybe something like what ggseg3d is doing.

enhancement

Make a option to make atlases symmetric

This is useful for visualizations purposes, esp since some centroids in asymmetric atlas are very non-sym

enhancement

Add cerebellum to brainconn3D mesh

enhancement